| Package | servtrans.sns.implementationGuide |
| Type | ConceptMap |
| Id | Id |
| FHIR Version | R4 |
| Source | http://fhir.ehdsi.eu/laboratory/https://build.fhir.org/ig/pablumar/github-guia-servtrans/ConceptMap-specimen2FHIR-lab-myhealtheu.html |
| Url | http://fhir.ehdsi.eu/laboratory/ConceptMap/specimen2FHIR-lab-myhealtheu |
| Version | 0.0.1 |
| Status | draft |
| Date | 2025-03-03T09:58:11+00:00 |
| Name | Specimen2Fhir |
| Title | MyHealth@EUSpecimen to this guide Map |
| Experimental | True |
| Description | MyHealth@EUSpecimen Model to this guide Map |
| Purpose | It shows how the Specimen data set defined by the EU MyHealth@EUguidelines is mapped into this guide |
No resources found
| StructureDefinition | |
Specimen-lab-myhealtheu  | Specimen: Laboratory |
| SpecimenLab | Specimen information |
| Specimen-lab-myhealtheu | Specimen: Laboratory |
| SpecimenLab | Specimen information |
Note: links and images are rebased to the (stated) source
Generated Narrative: ConceptMap specimen2FHIR-lab-myhealtheu
Mapping from Specimen information to Specimen: Laboratory
Group 1 Mapping from Specimen information to Specimen: Laboratory
| Source Code | Relationship | Target Code | Comment |
| SpecimenLab.identifier (Specimen identifier) | is equivalent to | Specimen.identifier | |
| SpecimenLab.speciesType (Type of species) | is related to | Specimen.subject.extension:patient-animal.extension:species | subject.ofType(Patient) |
| SpecimenLab.material (Material) | is equivalent to | Specimen.type | |
| SpecimenLab.collected (Collection period) | is equivalent to | Specimen.collection.collected[x] | |
| SpecimenLab.anatomicLocation (Anatomic location) | is related to | Specimen.collection.bodySite | |
| SpecimenLab.anatomicLocation (Anatomic location) | is related to | Specimen.collection.extension:bodySite | see Group 2 for details |
| SpecimenLab.anatomicLocation.location (Body location) | is related to | Specimen.collection.bodySite | |
| SpecimenLab.anatomicLocation.location (Body location) | is related to | Specimen.collection.extension:bodySite | see Group 2 for details |
| SpecimenLab.anatomicLocation.laterality (Laterality) | is related to | Specimen.collection.extension:bodySite | see Group 2 for details |
| SpecimenLab.anatomicLocation.qualifier (Specimen site qualifier) | is related to | Specimen.collection.extension:bodySite | see Group 2 for details |
| SpecimenLab.morphology (Morphology) | is related to | Specimen.collection.extension:bodySite | see Group 2 for details |
| SpecimenLab.sourceDevice (Source Device) | is related to | Specimen.subject | When the device (e.g. the catheter) is what has been examinated. In this case the subject is of type Device If the device is meant instead as the mean used to collect the specimen (e.g blood collected from the catheter), then, this is represented by the collectionMethod attribute and mapped into the Specimen.collection.method |
| SpecimenLab.sourceDevice.type (Type of device) | is equivalent to | Specimen.subject.type | When the device (e.g. the catheter) is what has been examinated. |
| SpecimenLab.sourceDevice.name (Device Name) | is equivalent to | Specimen.subject.manufacturer | When the device (e.g. the catheter) is what has been examinated. |
| SpecimenLab.sourceDevice.modelName (Model Name) | is equivalent to | Specimen.subject.deviceName.name | When the device (e.g. the catheter) is what has been examinated. |
| SpecimenLab.sourceDevice.identifier (Device Identifier) | is equivalent to | Specimen.subject.udiCarrier | When the device (e.g. the catheter) is what has been examinated. |
| SpecimenLab.sourceDevice.identifier (Device Identifier) | is equivalent to | Specimen.subject.identifier | When the device (e.g. the catheter) is what has been examinated. |
| SpecimenLab.sourceDevice.manufacturer (Manufacturer) | is equivalent to | Specimen.subject.manufacturer | When the device (e.g. the catheter) is what has been examinated. |
| SpecimenLab.collectionMethod (Collection procedure/method) | is equivalent to | Specimen.collection.method | |
| SpecimenLab.receivedDateTime (Received date) | is equivalent to | Specimen.receivedTime |
Group 2 Mapping from Specimen information to BodyStructureMyHealthEu
| Source Code | Relationship | Target Code |
| SpecimenLab.anatomicLocation (Anatomic location) | is related to | BodyStructure. |
| SpecimenLab.anatomicLocation.location (Body location) | is equivalent to | BodyStructure.location |
| SpecimenLab.anatomicLocation.laterality (Laterality) | is equivalent to | BodyStructure.extension:laterality |
| SpecimenLab.anatomicLocation.qualifier (Specimen site qualifier) | is equivalent to | BodyStructure.locationQualifier |
| SpecimenLab.morphology (Morphology) | is equivalent to | BodyStructure.morphology |
FHIR{
"resourceType" : "ConceptMap",
"id" : "specimen2FHIR-lab-myhealtheu",
"text" : {
"status" : "generated",
"div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p class=\"res-header-id\"><b>Generated Narrative: ConceptMap specimen2FHIR-lab-myhealtheu</b></p><a name=\"specimen2FHIR-lab-myhealtheu\"> </a><a name=\"hcspecimen2FHIR-lab-myhealtheu\"> </a><a name=\"specimen2FHIR-lab-myhealtheu-en-US\"> </a><p>Mapping from <a href=\"StructureDefinition-SpecimenLab.html\">Specimen information</a> to <a href=\"StructureDefinition-Specimen-lab-myhealtheu.html\">Specimen: Laboratory</a></p><br/><p><b>Group 1 </b>Mapping from <a href=\"StructureDefinition-SpecimenLab.html\">Specimen information</a> to <a href=\"StructureDefinition-Specimen-lab-myhealtheu.html\">Specimen: Laboratory</a></p><table class=\"grid\"><tr><td><b>Source Code</b></td><td><b>Relationship</b></td><td><b>Target Code</b></td><td><b>Comment</b></td></tr><tr><td>SpecimenLab.identifier (Specimen identifier)</td><td><a href=\"http://hl7.org/fhir/extensions/5.2.0/CodeSystem-concept-map-equivalence.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td>Specimen.identifier</td><td/></tr><tr><td>SpecimenLab.speciesType (Type of species)</td><td><a href=\"http://hl7.org/fhir/extensions/5.2.0/CodeSystem-concept-map-equivalence.html#relatedto\" title=\"relatedto\">is related to</a></td><td>Specimen.subject.extension:patient-animal.extension:species</td><td>subject.ofType(Patient)</td></tr><tr><td>SpecimenLab.material (Material)</td><td><a href=\"http://hl7.org/fhir/extensions/5.2.0/CodeSystem-concept-map-equivalence.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td>Specimen.type</td><td/></tr><tr><td>SpecimenLab.collected (Collection period)</td><td><a href=\"http://hl7.org/fhir/extensions/5.2.0/CodeSystem-concept-map-equivalence.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td>Specimen.collection.collected[x]</td><td/></tr><tr><td>SpecimenLab.anatomicLocation (Anatomic location)</td><td><a href=\"http://hl7.org/fhir/extensions/5.2.0/CodeSystem-concept-map-equivalence.html#relatedto\" title=\"relatedto\">is related to</a></td><td>Specimen.collection.bodySite</td><td/></tr><tr><td>SpecimenLab.anatomicLocation (Anatomic location)</td><td><a href=\"http://hl7.org/fhir/extensions/5.2.0/CodeSystem-concept-map-equivalence.html#relatedto\" title=\"relatedto\">is related to</a></td><td>Specimen.collection.extension:bodySite</td><td>see Group 2 for details</td></tr><tr><td>SpecimenLab.anatomicLocation.location (Body location)</td><td><a href=\"http://hl7.org/fhir/extensions/5.2.0/CodeSystem-concept-map-equivalence.html#relatedto\" title=\"relatedto\">is related to</a></td><td>Specimen.collection.bodySite</td><td/></tr><tr><td>SpecimenLab.anatomicLocation.location (Body location)</td><td><a href=\"http://hl7.org/fhir/extensions/5.2.0/CodeSystem-concept-map-equivalence.html#relatedto\" title=\"relatedto\">is related to</a></td><td>Specimen.collection.extension:bodySite</td><td>see Group 2 for details</td></tr><tr><td>SpecimenLab.anatomicLocation.laterality (Laterality)</td><td><a href=\"http://hl7.org/fhir/extensions/5.2.0/CodeSystem-concept-map-equivalence.html#relatedto\" title=\"relatedto\">is related to</a></td><td>Specimen.collection.extension:bodySite</td><td>see Group 2 for details</td></tr><tr><td>SpecimenLab.anatomicLocation.qualifier (Specimen site qualifier)</td><td><a href=\"http://hl7.org/fhir/extensions/5.2.0/CodeSystem-concept-map-equivalence.html#relatedto\" title=\"relatedto\">is related to</a></td><td>Specimen.collection.extension:bodySite</td><td>see Group 2 for details</td></tr><tr><td>SpecimenLab.morphology (Morphology)</td><td><a href=\"http://hl7.org/fhir/extensions/5.2.0/CodeSystem-concept-map-equivalence.html#relatedto\" title=\"relatedto\">is related to</a></td><td>Specimen.collection.extension:bodySite</td><td>see Group 2 for details</td></tr><tr><td>SpecimenLab.sourceDevice (Source Device)</td><td><a href=\"http://hl7.org/fhir/extensions/5.2.0/CodeSystem-concept-map-equivalence.html#relatedto\" title=\"relatedto\">is related to</a></td><td>Specimen.subject</td><td>When the device (e.g. the catheter) is what has been examinated. In this case the subject is of type Device\nIf the device is meant instead as the mean used to collect the specimen (e.g blood collected from the catheter), then, this is represented by the collectionMethod attribute and mapped into the Specimen.collection.method</td></tr><tr><td>SpecimenLab.sourceDevice.type (Type of device)</td><td><a href=\"http://hl7.org/fhir/extensions/5.2.0/CodeSystem-concept-map-equivalence.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td>Specimen.subject.type</td><td>When the device (e.g. the catheter) is what has been examinated.</td></tr><tr><td>SpecimenLab.sourceDevice.name (Device Name)</td><td><a href=\"http://hl7.org/fhir/extensions/5.2.0/CodeSystem-concept-map-equivalence.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td>Specimen.subject.manufacturer</td><td>When the device (e.g. the catheter) is what has been examinated.</td></tr><tr><td>SpecimenLab.sourceDevice.modelName (Model Name)</td><td><a href=\"http://hl7.org/fhir/extensions/5.2.0/CodeSystem-concept-map-equivalence.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td>Specimen.subject.deviceName.name</td><td>When the device (e.g. the catheter) is what has been examinated.</td></tr><tr><td>SpecimenLab.sourceDevice.identifier (Device Identifier)</td><td><a href=\"http://hl7.org/fhir/extensions/5.2.0/CodeSystem-concept-map-equivalence.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td>Specimen.subject.udiCarrier</td><td>When the device (e.g. the catheter) is what has been examinated.</td></tr><tr><td>SpecimenLab.sourceDevice.identifier (Device Identifier)</td><td><a href=\"http://hl7.org/fhir/extensions/5.2.0/CodeSystem-concept-map-equivalence.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td>Specimen.subject.identifier</td><td>When the device (e.g. the catheter) is what has been examinated.</td></tr><tr><td>SpecimenLab.sourceDevice.manufacturer (Manufacturer)</td><td><a href=\"http://hl7.org/fhir/extensions/5.2.0/CodeSystem-concept-map-equivalence.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td>Specimen.subject.manufacturer</td><td>When the device (e.g. the catheter) is what has been examinated.</td></tr><tr><td>SpecimenLab.collectionMethod (Collection procedure/method)</td><td><a href=\"http://hl7.org/fhir/extensions/5.2.0/CodeSystem-concept-map-equivalence.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td>Specimen.collection.method</td><td/></tr><tr><td>SpecimenLab.receivedDateTime (Received date)</td><td><a href=\"http://hl7.org/fhir/extensions/5.2.0/CodeSystem-concept-map-equivalence.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td>Specimen.receivedTime</td><td/></tr></table><hr/><p><b>Group 2 </b>Mapping from <a href=\"StructureDefinition-SpecimenLab.html\">Specimen information</a> to <code>BodyStructureMyHealthEu</code></p><table class=\"grid\"><tr><td><b>Source Code</b></td><td><b>Relationship</b></td><td><b>Target Code</b></td></tr><tr><td>SpecimenLab.anatomicLocation (Anatomic location)</td><td><a href=\"http://hl7.org/fhir/extensions/5.2.0/CodeSystem-concept-map-equivalence.html#relatedto\" title=\"relatedto\">is related to</a></td><td>BodyStructure.</td></tr><tr><td>SpecimenLab.anatomicLocation.location (Body location)</td><td><a href=\"http://hl7.org/fhir/extensions/5.2.0/CodeSystem-concept-map-equivalence.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td>BodyStructure.location</td></tr><tr><td>SpecimenLab.anatomicLocation.laterality (Laterality)</td><td><a href=\"http://hl7.org/fhir/extensions/5.2.0/CodeSystem-concept-map-equivalence.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td>BodyStructure.extension:laterality</td></tr><tr><td>SpecimenLab.anatomicLocation.qualifier (Specimen site qualifier)</td><td><a href=\"http://hl7.org/fhir/extensions/5.2.0/CodeSystem-concept-map-equivalence.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td>BodyStructure.locationQualifier</td></tr><tr><td>SpecimenLab.morphology (Morphology)</td><td><a href=\"http://hl7.org/fhir/extensions/5.2.0/CodeSystem-concept-map-equivalence.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td>BodyStructure.morphology</td></tr></table></div>"
},
"url" : "http://fhir.ehdsi.eu/laboratory/ConceptMap/specimen2FHIR-lab-myhealtheu",
"version" : "0.0.1",
"name" : "Specimen2Fhir",
"title" : "MyHealth@EUSpecimen to this guide Map",
"status" : "draft",
"experimental" : true,
"date" : "2025-03-03T09:58:11+00:00",
"publisher" : "SNS",
"contact" : [
{
"name" : "SNS",
"telecom" : [
{
"system" : "url",
"value" : "https://sns.gob.es"
}
]
}
],
"description" : "MyHealth@EUSpecimen Model to this guide Map",
"purpose" : "It shows how the Specimen data set defined by the EU MyHealth@EUguidelines is mapped into this guide",
"sourceUri" : "http://fhir.ehdsi.eu/laboratory/StructureDefinition/SpecimenLab",
"targetUri" : "http://fhir.ehdsi.eu/laboratory/StructureDefinition/Specimen-lab-myhealtheu",
"group" : [
{
"source" : "http://fhir.ehdsi.eu/laboratory/StructureDefinition/SpecimenLab",
"target" : "http://fhir.ehdsi.eu/laboratory/StructureDefinition/Specimen-lab-myhealtheu",
"element" : [
{
"code" : "SpecimenLab.identifier",
"display" : "Specimen identifier",
"target" : [
{
"code" : "Specimen.identifier",
"equivalence" : "equivalent"
}
]
},
{
"code" : "SpecimenLab.speciesType",
"display" : "Type of species",
"target" : [
{
"code" : "Specimen.subject.extension:patient-animal.extension:species",
"equivalence" : "relatedto",
"comment" : "subject.ofType(Patient)"
}
]
},
{
"code" : "SpecimenLab.material",
"display" : "Material",
"target" : [
{
"code" : "Specimen.type",
"equivalence" : "equivalent"
}
]
},
{
"code" : "SpecimenLab.collected",
"display" : "Collection period",
"target" : [
{
"code" : "Specimen.collection.collected[x]",
"equivalence" : "equivalent"
}
]
},
{
"code" : "SpecimenLab.anatomicLocation",
"display" : "Anatomic location",
"target" : [
{
"code" : "Specimen.collection.bodySite",
"equivalence" : "relatedto"
}
]
},
{
"code" : "SpecimenLab.anatomicLocation",
"display" : "Anatomic location",
"target" : [
{
"code" : "Specimen.collection.extension:bodySite",
"equivalence" : "relatedto",
"comment" : "see Group 2 for details"
}
]
},
{
"code" : "SpecimenLab.anatomicLocation.location",
"display" : "Body location",
"target" : [
{
"code" : "Specimen.collection.bodySite",
"equivalence" : "relatedto"
}
]
},
{
"code" : "SpecimenLab.anatomicLocation.location",
"display" : "Body location",
"target" : [
{
"code" : "Specimen.collection.extension:bodySite",
"equivalence" : "relatedto",
"comment" : "see Group 2 for details"
}
]
},
{
"code" : "SpecimenLab.anatomicLocation.laterality",
"display" : "Laterality",
"target" : [
{
"code" : "Specimen.collection.extension:bodySite",
"equivalence" : "relatedto",
"comment" : "see Group 2 for details"
}
]
},
{
"code" : "SpecimenLab.anatomicLocation.qualifier",
"display" : "Specimen site qualifier",
"target" : [
{
"code" : "Specimen.collection.extension:bodySite",
"equivalence" : "relatedto",
"comment" : "see Group 2 for details"
}
]
},
{
"code" : "SpecimenLab.morphology",
"display" : "Morphology",
"target" : [
{
"code" : "Specimen.collection.extension:bodySite",
"equivalence" : "relatedto",
"comment" : "see Group 2 for details"
}
]
},
{
"code" : "SpecimenLab.sourceDevice",
"display" : "Source Device",
"target" : [
{
"code" : "Specimen.subject",
"equivalence" : "relatedto",
"comment" : "When the device (e.g. the catheter) is what has been examinated. In this case the subject is of type Device\nIf the device is meant instead as the mean used to collect the specimen (e.g blood collected from the catheter), then, this is represented by the collectionMethod attribute and mapped into the Specimen.collection.method"
}
]
},
{
"code" : "SpecimenLab.sourceDevice.type",
"display" : "Type of device",
"target" : [
{
"code" : "Specimen.subject.type",
"equivalence" : "equivalent",
"comment" : "When the device (e.g. the catheter) is what has been examinated."
}
]
},
{
"code" : "SpecimenLab.sourceDevice.name",
"display" : "Device Name",
"target" : [
{
"code" : "Specimen.subject.manufacturer",
"equivalence" : "equivalent",
"comment" : "When the device (e.g. the catheter) is what has been examinated."
}
]
},
{
"code" : "SpecimenLab.sourceDevice.modelName",
"display" : "Model Name",
"target" : [
{
"code" : "Specimen.subject.deviceName.name",
"equivalence" : "equivalent",
"comment" : "When the device (e.g. the catheter) is what has been examinated."
}
]
},
{
"code" : "SpecimenLab.sourceDevice.identifier",
"display" : "Device Identifier",
"target" : [
{
"code" : "Specimen.subject.udiCarrier",
"equivalence" : "equivalent",
"comment" : "When the device (e.g. the catheter) is what has been examinated."
}
]
},
{
"code" : "SpecimenLab.sourceDevice.identifier",
"display" : "Device Identifier",
"target" : [
{
"code" : "Specimen.subject.identifier",
"equivalence" : "equivalent",
"comment" : "When the device (e.g. the catheter) is what has been examinated."
}
]
},
{
"code" : "SpecimenLab.sourceDevice.manufacturer",
"display" : "Manufacturer",
"target" : [
{
"code" : "Specimen.subject.manufacturer",
"equivalence" : "equivalent",
"comment" : "When the device (e.g. the catheter) is what has been examinated."
}
]
},
{
"code" : "SpecimenLab.collectionMethod",
"display" : "Collection procedure/method",
"target" : [
{
"code" : "Specimen.collection.method",
"equivalence" : "equivalent"
}
]
},
{
"code" : "SpecimenLab.receivedDateTime",
"display" : "Received date",
"target" : [
{
"code" : "Specimen.receivedTime",
"equivalence" : "equivalent"
}
]
}
]
},
{
"source" : "http://fhir.ehdsi.eu/laboratory/StructureDefinition/SpecimenLab",
"target" : "BodyStructureMyHealthEu",
"element" : [
{
"code" : "SpecimenLab.anatomicLocation",
"display" : "Anatomic location",
"target" : [
{
"code" : "BodyStructure.",
"equivalence" : "relatedto"
}
]
},
{
"code" : "SpecimenLab.anatomicLocation.location",
"display" : "Body location",
"target" : [
{
"code" : "BodyStructure.location",
"equivalence" : "equivalent"
}
]
},
{
"code" : "SpecimenLab.anatomicLocation.laterality",
"display" : "Laterality",
"target" : [
{
"code" : "BodyStructure.extension:laterality",
"equivalence" : "equivalent"
}
]
},
{
"code" : "SpecimenLab.anatomicLocation.qualifier",
"display" : "Specimen site qualifier",
"target" : [
{
"code" : "BodyStructure.locationQualifier",
"equivalence" : "equivalent"
}
]
},
{
"code" : "SpecimenLab.morphology",
"display" : "Morphology",
"target" : [
{
"code" : "BodyStructure.morphology",
"equivalence" : "equivalent"
}
]
}
]
}
]
}
XIG built as of ??metadata-date??. Found ??metadata-resources?? resources in ??metadata-packages?? packages.